Sequencing raw data of conjunctival melanoma

Conjunctival melanoma

Sample description

Twelve formalin-fixed and paraffin embedded (FFPE) conjunctival melanoma specimens were retrospectively enrolled in this study. Six cases each with good or poor clinical outcome with a follow-up of at least 24 months were examined, the latter being defined by local recurrence and/or systemic metastases. Following routine histological staining, the histological diagnosis for each specimen was determined by two experienced ophthalmic pathologists. The 3'-RNA-sequencing method MACE was applied for sequencing of FFPE samples, as described in Boneva et al. (2020).

Linked publication

Data access

Fastq files of all replicates can be downloaded from European Nucleotide Archive using the following links. Please cite the publication shown above, when using data for your research.

Sample Age at surgery (years) Sex FFPE/unfixed Fastq files
1 (good prognosis) 77.1 male FFPE download
2 (good prognosis) 55.0 female FFPE download
3 (good prognosis) 27.3 female FFPE download
4 (good prognosis) 52.9 female FFPE download
5 (good prognosis) 81.0 female FFPE download
6 (good prognosis) 67.4 female FFPE download
7 (poor prognosis) 42.8 female FFPE download
8 (poor prognosis) 85.3 male FFPE download
9 (poor prognosis) 61.5 female FFPE download
10 (poor prognosis) 37.1 female FFPE download
11 (poor prognosis) 68.0 female FFPE download
12 (poor prognosis) 51.5 male FFPE download